Application of GBS profiling in ornamental plants

Samiei, leila; hadizadeh, hanieh

doi:10.52547/flowerjournal.6.2.95

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Volume 6, Issue 2 (Fall and Winter 2021)

FOP 2021, 6(2): 95-106

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Application of GBS profiling in ornamental plants

Leila Samiei ^*

, Hanieh Hadizadeh

ferdowsi University of Mashhad

Abstract: (1445 Views)

The lack of sufficient genomic information of ornamental plants besides their polyploidy and large genome size are the main challenges ahead of their molecular breeding. Next-generation sequencing (NGS) is a viable method capable of developing a large number of DNA markers in a short course of time. Currently, single-nucleotide polymorphisms (SNPs) are recognized as one of the most studied and popular DNA markers using for various purposes in plant breeding. GBS (genotyping-by-sequencing) approach is one of the leading techniques that has emerged to evaluate the molecular characteristics of plants possessing complex or non-sequenced genomes using SNP markers. This method has so far been used for breeding and germplasm evaluation of some ornamental plant species including Rosa, Petunia, Hydrangea, and Gloxinia. Among these studies, one study is done to perform GWAS on Hydrangea macrophylla L., ten studies to investigate the genetic diversity of various ornamental species including Gloxinia, Dendrobium orchid, as well as ornamental trees Franklinia alatamaha Marshall and Cornus florida L., four studies to construct and elaborate the genetic map of plants species including Rosa and Petunia, three studies to develop molecular markers in rose, lilac and Hydrangea species and one study to investigate the genetic diversity within and between Iranian Eremurus spp. This is a potential method for examination of genetic diversity of plants, assembling high density genetic linkage maps, discovering the required molecular markers in QTL and GWAS studies, and verifying candidate genes including genes controlling the flowering process. Owing to the high efficiency and accuracy as well as the low cost per marker of this method compared to other genotyping techniques, GBS can be widely used in genetic studies, sequencing and breeding of ornamental plants.

Keywords: Next generation sequencing, Genotyping-by-sequencing, Ornamental plants, Molecular markers

Full-Text [PDF 1074 kb] (527 Downloads)

Type of Study: Review | Subject: Special
Received: 2021/04/26 | Accepted: 2021/09/13 | Published: 2022/02/25

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53. • Tamaki, I., Yoichi, W., Matsuki, Y., Suyama, Y., & Mizuno, M. (2017). Inconsistency between morphological traits and ancestry of individuals in the hybrid zone between two Rhododendron japonoheptamerum varieties revealed by a genotyping-by-sequencing approach. Tree Genetics & Genomes, 13(1), 1-10. [DOI:10.1007/s11295-016-1084-x]

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58. • Yagi, M. (2015). Recent progress in genomic analysis of ornamental plants, with a focus on carnation. The Horticulture Journal, 84(1), 3-13. [DOI:10.2503/hortj.MI-IR01]

59. • Yan, M. Byrne, David, H. Klein, P., Yang, J., Dong, Q. (2018). Genotyping-by-sequencing application on diploid rose and a resulting high-density SNP-based consensus map. Horticulture Research. 5(17), 1-14. [DOI:10.1038/s41438-018-0021-6]

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61. • Zhang, L., Guo, D., Guo, L., Guo, Q., Wang, H., & Hou, X. (2019). Construction of a high-density genetic map and QTLs mapping with GBS from the interspecific F1 population of P. ostii 'Fengdan Bai'and P. suffruticosa 'Xin Riyuejin'. Scientia Horticulturae, 246, 190-200. [DOI:10.1016/j.scienta.2018.10.039]

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